package org.slusk.thynwor.util;

import java.io.File;

public class QChromChecker {

	public static String basedir="/media/stormgiant/workspace";
	public static final String[] chroms = {
		"/thynwor_runs/orig/better_base_lin/base_lin_9/chromosome/chromosome1052358.xml"
		,"/thynwor_runs/orig/heb/heb_lin_t_noIF/heb_lin_t_noIF_10/chromosome/chromosome1248068.xml"
		,"/thynwor_runs/orig/reinf bp/bpR_lin_t_noIF/bpR_lin_t_noIF_2/chromosome/chromosome239895.xml"
		,"/thynwor_runs/orig/supervised bp/bpSup_lin_f_IF/bpSup_lin_f_IF_4/chromosome/chromosome506298.xml"
		,"/thynwor_runs/orig/supervised bp/bpSup_lin_f_noIf/bpSup_lin_f_noIF_2/chromosome/chromosome219127.xml"
		,"/thynwor_runs/orig/supervised bp/bpSup_lin_t_noIF/bpSup_lin_t_noIF_7/chromosome/chromosome214604.xml"
		,"/thynwor_runs/orig/td/td_lin_f_IF/td_lin_f_IF_18/chromosome/chromosome2315467.xml"
		,"/thynwor_runs/orig/td/td_lin_f_noIF/td_lin_f_noIF_5/chromosome/chromosome539649.xml"
		,"/thynwor_runs/orig/td/td_lin_t_IF/td_lin_t_IF_9/chromosome/chromosome1117363.xml"
		,"/thynwor_runs/orig/td/td_lin_t_noIF/td_lin_t_noIF_8/chromosome/chromosome982696.xml"
		,"/thynwor_runs/finalish_withBetterTracking/base/base_lin_9/chromosome/chromosome1072624.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpRotSup/bpRotSup_15/chromosome/chromosome1965558.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpRotSup_useBootstrapping100/bpRotSup_useBootstrapping100_2/chromosome/chromosome250665.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpRotSup_useBootstrapping200/bpRotSup_useBootstrapping200_4/chromosome/chromosome437165.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpRotSup_useBootstrapping50/bpRotSup_useBootstrapping50_6/chromosome/chromosome733925.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup1/bpSup1_8/chromosome/chromosome1024230.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup1_useBootstrapping100/bpSup1_useBootstrapping100_5/chromosome/chromosome563255.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup1_useBootstrapping200/bpSup1_useBootstrapping200_6/chromosome/chromosome726366.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup1_useBootstrapping50/bpSup1_useBootstrapping50_2/chromosome/chromosome234204.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup4/bpSup_1/chromosome/chromosome104754.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup4_useBootstrapping100/bpSup4_useBootstrapping100_15/chromosome/chromosome2076625.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup4_useBootstrapping200/bpSup4_useBootstrapping200_2/chromosome/chromosome208690.xml"
		,"/thynwor_runs/finalish_withBetterTracking/bpSup4_useBootstrapping50/bpSup4_useBootstrapping50_12/chromosome/chromosome1583183.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpRotSup_TrainingBank_4/intermittentOnly_bpRotSup_useTrainingBank_4_2/chromosome/chromosome206824.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpRotSup_useTrainingBank_8/intermittentOnly_bpRotSup_useTrainingBank_8_15/chromosome/chromosome1791580.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpSup1_useTrainingBank_4/intermittentOnly_bpSup1_useTrainingBank_4_7/chromosome/chromosome800519.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpSup1_useTrainingBank_8/intermittentOnly_bpSup_useTrainingBank_8_13/chromosome/chromosome1562426.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpSup4_useTrainingBank_4/intermittentOnly_bpSup4_useTrainingBank_4_2/chromosome/chromosome217231.xml"
		,"/thynwor_runs/finalish_withBetterTracking/intermittentOnly_bpSup4_useTrainingBank_8/intermittentOnly_bpSup4_useTrainingBank_8_16/chromosome/chromosome1883777.xml"		
	};
	
	/**
	 * @param args
	 */
	public static void main(String[] args) {
		if (args.length==1) {
			basedir = args[0];
		}
		for (String chrom : chroms) {
			if (new File(basedir+chrom).exists()) {
				System.out.println(basedir+chrom + " -- ok");
			} else {
				System.out.println("*** NOT FOUND -->" + chrom + " ***");
			}
		}

	}

}
